By the year 1506 the Portuguese landed on the islands and began to challenge the Bajas (Bantu Muslim chiefs) and Fanis (lesser chiefs). In the years that followed the islands were sacked by the forces of Afonso de Albuquerque in the year 1514 by the Portuguese. The ruler of the Comoran Muslims barely survived after hiding in an extinct volcanic crater despite the inadequacy of their cover, the Portuguese miraculously never found them. In the year 1648 the islands were raided by the Malagasy pirates, they sacked Iconi, a coastal trading hub near Ngazidja after defeating the weak Sultan.
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The Comoro Islands, like other coastal areas in the region, were important stops in early Islamic trade routes frequented by Persians and Arabs. Despite its distance from the coast, Comoros is situated along the major sea route between Kilwa and Mozambique, an outlet for Zimbabwean gold.[12]
Omani Arab influence in the region increased when the Portuguese were driven out of Mombasa, Fort Jesus and nearby Zanzibar came under direct Omani rule, thud reflecting upon Comorian culture, especially architecture and religion. Many rival sultanates colonized the area in the sixteenth and seventeenth centuries.[13]
By the time Europeans showed interest in the Comoros, the dominant Arab cultural veneer of the islands led many to remind of the society's Arab colonial history at the expense of its native Swahili and African heritage. More recent western scholarship by Thomas Spear and Randall Pouwells emphasizes black African historical predominance over the diffusionist perspective.[14]
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